Laterite steps leading down to a pond with a stone statue in the Hortus Malabaricus Botanical Garden
Publications

Publications

Peer-reviewed papers from SGRF projects and collaborations, including cover stories in Nature and Nature Genetics.

18 papers

Newest first. Each title links to the paper.

2021

  1. Retinoblastoma genetics screening and clinical management Gupta H, Malaichamy S, Mallipatna A, et al. BMC Medical Genomics, 2021, 14:188

2020

  1. The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins Suryamohan K, Krishnankutty SP, Guillory J, et al. Nature Genetics, 2020 Cover story
  2. Validation of a genome-wide polygenic score for coronary artery disease in South Asians Wang M, Menon R, Mishra S, et al. Journal of the American College of Cardiology, 2020, 76(6):703–714
  3. Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate Pandey A, Stawiski EW, Durinck S, et al. Nature Communications, 2020
  4. Proteogenomics analysis unveils a TFG-RET gene fusion and druggable targets in papillary thyroid carcinomas Krishnan A, Berthelet J, Renaud E, et al. Nature Communications, 2020
  5. Restricted epitope specificity determined by variable region germline segment pairing in rodent antibody repertoires Hsiao YC, Chen YJ, Goldstein LD, et al. mAbs, 2020

2019

  1. The GenomeAsia 100K Project enables genetic discoveries across Asia GenomeAsia100K Consortium Nature, 2019 Cover story
  2. Identification of African-specific admixture between modern and archaic humans Wall JD, Ratan A, Stawiski E; GenomeAsia 100K Consortium American Journal of Human Genetics, 2019
  3. Whole genome sequencing and comparative genomic analysis reveal allelic variations unique to a purple colored rice landrace (Oryza sativa ssp. indica cv. Purpleputtu) Lachagari VB, Gupta R, Lekkala SP, et al. Frontiers in Plant Science, 2019
  4. S100a4 upregulation in Pik3caH1047R;Trp53R270H;MMTV-Cre-driven mammary tumors promotes metastasis Yuan W, Goldstein LD, Durinck S, et al. Breast Cancer Research, 2019
  5. Complete mitogenome reveals genetic divergence and phylogenetic relationships among Indian cattle (Bos indicus) breeds Pramod RK, Velayutham D, et al. Animal Biotechnology, 2019

2017

  1. Mycobacterium tuberculosis in wild Asian elephants, southern India Zachariah A, Pandiyan J, Madhavilatha GK, et al. Emerging Infectious Diseases, 2017
  2. Annotation transfer by homology among closely related genomes helps to identify protein function in Plasmodium species Rajan DR, Chandramohan B International Journal of Bioinformatics Research and Applications, 2017, 13(1):22–39