Publications

2020

  • Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate.

    Pandey A, Stawiski EW, Durinck S, Gowda H, Goldstein LD, Barbhuiya MA, Schröder MS, Sreenivasamurthy SK, Kim SW, Phalke S, Suryamohan K, Lee K, Chakraborty P, Kode V, Shi X, Chatterjee A, Datta K, Khan AA, Subbannayya T, Wang J, Chaudhuri S, Gupta S, Shrivastav BR, Jaiswal BS, Poojary SS, Bhunia S, Garcia P, Bizama C, Rosa L, Kwon W, Kim H, Han Y, Yadav TD, Ramprasad VL, Chaudhuri A, Modrusan Z, Roa JC, Tiwari PK, Jang JY, Seshagiri S.
    Nat Commun. 2020 Aug 24;11(1):4225. doi: 10.1038/s41467-020-17880-4.
    PMID: 32839463


  • Proteogenomics analysis unveils a TFG-RET gene fusion and druggable targets in papillary thyroid carcinomas.

    Krishnan A, Berthelet J, Renaud E, Rosigkeit S, Distler U, Stawiski E, Wang J, Modrusan Z, Fiedler M, Bienz M, Tenzer S, Schad A, Roth W, Thiede B, Seshagiri S, Musholt TJ, Rajalingam K.
    Nat Commun. 2020 Apr 28;11(1):2056. doi: 10.1038/s41467-020-15955-w.
    PMID: 32345963


  • Restricted epitope specificity determined by variable region germline segment pairing in rodent antibody repertoires.

    Hsiao YC, Chen YJ, Goldstein LD, Wu J, Lin Z, Schneider K, Chaudhuri S, Antony A, Bajaj Pahuja K, Modrusan Z, Seshasayee D, Seshagiri S, Hötzel I.
    MAbs. 2020 Jan-Dec;12(1):1722541. doi: 10.1080/19420862.2020.1722541.
    PMID: 32041466


  • The Indian cobra reference genome and transcriptome enables comprehensive identification of venom toxins.

    Suryamohan K, Krishnankutty SP, Guillory J, Jevit M, Schröder MS, Wu M, Kuriakose B, Mathew OK, Perumal RC, Koludarov I, Goldstein LD, Senger K, Dixon MD, Velayutham D, Vargas D, Chaudhuri S, Muraleedharan M, Goel R, Chen YJ, Ratan A, Liu P, Faherty B, de la Rosa G, Shibata H, Baca M, Sagolla M, Ziai J, Wright GA, Vucic D, Mohan S, Antony A, Stinson J, Kirkpatrick DS, Hannoush RN, Durinck S, Modrusan Z, Stawiski EW, Wiley K, Raudsepp T, Kini RM, Zachariah A, Seshagiri S.
    Nat Genet. 2020 Jan;52(1):106-117. doi: 10.1038/s41588-019-0559-8. Epub 2020 Jan 6.
    PMID: 31907489

  • 2019

  • S100a4 upregulation in Pik3caH1047R;Trp53R270H;MMTV-Cre-driven mammary tumors promotes metastasis.

    Yuan W, Goldstein LD, Durinck S, Chen YJ, Nguyen TT, Kljavin NM, Sokol ES, Stawiski EW, Haley B, Ziai J, Modrusan Z, Seshagiri S.
    Breast Cancer Res. 2019 Dec 27;21(1):152. doi: 10.1186/s13058-019-1238-5.
    PMID: 31881983


  • Identification of African-Specific Admixture between Modern and Archaic Humans.

    Wall JD, Ratan A, Stawiski E; GenomeAsia 100K Consortium.
    Am J Hum Genet. 2019 Dec 5;105(6):1254-1261. doi: 10.1016/j.ajhg.2019.11.005.
    PMID: 31809748


  • The GenomeAsia 100K Project enables genetic discoveries across Asia.

    GenomeAsia100K Consortium.
    Nature. 2019 Dec;576(7785):106-111. doi: 10.1038/s41586-019-1793-z. Epub 2019 Dec 4.
    PMID: 31802016


  • Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus.

    Nguyen TT, Suryamohan K, Kuriakose B, Janakiraman V, Reichelt M, Chaudhuri S, Guillory J, Divakaran N, Rabins PE, Goel R, Deka B, Sarkar S, Ekka P, Tsai YC, Vargas D, Santhosh S, Mohan S, Chin CS, Korlach J, Thomas G, Babu A, Seshagiri S.
    Sci Rep. 2018 Jun 12;8(1):8924. doi: 10.1038/s41598-018-27084-y. Erratum in: Sci Rep. 2018 Aug 31;8(1):13274.
    PMID: 29895987


  • Whole Genome Sequencing and Comparative Genomic Analysis Reveal Allelic Variations Unique to a Purple Colored Rice Landrace (Oryza sativa ssp. indica cv. Purpleputtu).

    Lachagari VB, Gupta R, Lekkala SP, Mahadevan L, Kuriakose B, Chakravartty N, Mohan Katta AVSK, Santhosh S, Reddy AR, Thomas G
    Front Plant Sci. 2019 May 7;10:513. doi: 10.3389/fpls.2019.00513. eCollection 2019.
    PMID: 31134103

  • 2018

  • Next-generation sequencing analysis reveals high bacterial diversity in wild venomous and non-venomous snakes from India

    Krishnankutty SP, Muraleedharan M, Perumal RC, Michael S, Benny J, Balan B, Kumar P, Manazhi J, Kumar BD, Santhosh S, Thomas G, Gupta R, Zachariah A
    J Venom Anim Toxins Incl Trop Dis. 2018 Dec 22;24:41. doi: 10.1186/s40409-018-0181-8. eCollection 2018.
    PMID: 30598660


  • Extended genotypic evaluation and comparison of twenty-two cases of lethal EEHV1 hemorrhagic disease in wild and captive Asian elephants in India

    Zachariah A, Sajesh PK, Santhosh S, Bathrachalam C, Megha M, Pandiyan J, Jishnu M, Kobragade RS, Long SY, Zong JC, Latimer EM, Heaggans SY, Hayward GS
    PLoS One. 2018 Aug 22;13(8):e0202438. doi: 10.1371/journal.pone.0202438. eCollection 2018.
    PMID: 30133540


  • Comprehensive analysis of single molecule sequencing-derived complete genome and whole transcriptome of Hyposidra talaca nuclear polyhedrosis virus

    Nguyen TT, Suryamohan K, Kuriakose B, Janakiraman V, Reichelt M, Chaudhuri S, Guillory J, Divakaran N, Rabins PE, Goel R, Deka B, Sarkar S, Ekka P, Tsai YC, Vargas D, Santhosh S, Mohan S, Chin CS, Korlach J, Thomas G, Babu A, Seshagiri S
    Sci Rep. 2018 Jun 12;8(1):8924. doi: 10.1038/s41598-018-27084-y.
    PMID: 29895987


  • Complete mitogenome reveals genetic divergence and phylogenetic relationships among Indian cattle (Bos indicus) breeds

    Pramod RK, Velayutham D, P K S, P S B, Zachariah A, Zachariah A, B C, S S S, P G, Dhinoth Kumar B, Iype S, Gupta R, Santhosh S, Thomas G
    Anim Biotechnol. 2019 Jul;30(3):219-232. doi: 10.1080/10495398.2018.1476376. Epub 2018 Jun 23.
    PMID: 29938580

  • 2017
  • Mycobacterium tuberculosis in Wild Asian Elephants, Southern India

    Zachariah A, Pandiyan J, Madhavilatha GK, Mundayoor S, Chandramohan B, Sajesh PK, Santhosh S, Mikota SK
    Emerg Infect Dis. 2017 Mar;23(3):504-506. doi: 10.3201/eid2303.161741.
    PMID: 28221104

  • Devaraj Raghul Rajan & Bathrachalam Chandramohan (2017).
    Annotation transfer by homology among closely related genomes helps to identify protein function in Plasmodium species, Int. J. Bioinformatics Research and Applications, 13(1), 22-39, DOI: 10.1504/IJBRA.2017.082054
  • 2014
  • Gupta A, Gopal M, Thomas GV, Manikandan V, GajewskiJ, Thomas G, SeshagiriS, Schuster SC, Rajesh P, Gupta R.
    Whole genome sequencing and analysis of plant growth promoting bacteria isolated from the rhizosphere of plantation crops coconut, cocoa and arecanut. PLoS One. 2014 Aug 27;9(8):e104259. doi: 10.1371/journal.pone.0104259. eCollection2014.